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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Effort-based Versioning. (Changes to features documented as “experimental” will not increment macro and meso version numbers.)

Unreleased

(no summary yet)

2.1.7 - 2025-04-24

Minor enhancements and bugfixes.

Added

  • Print progress information on every line when stdout is not a terminal.
  • The stepup command now accepts the --no-clean option to disable removal of outdated outputs at the end of a successful run.

Changed

  • Simplified the output of the cases command of the script driver().
  • The arguments inp, out and vol are converted to Path instances before calling the run() function.

Fixed

  • Never amend HERE and ROOT environment variables.

2.1.6 - 2025-04-24

This is a minor bugfix release.

Fixed

  • Do not abort StepUp when wal or shm files are present.
  • Upon restart, handle removed files correctly that previously matched a deferred glob.

2.1.5 - 2025-03-25

This is a minor bugfix release.

Fixed

  • Fixed bug in format string in stepup.core.api.
  • Small cleanups
  • Tweak absolute path tests for non-FHS systems.

2.1.4 - 2025-02-12

This is a minor bugfix release.

Fixed

  • Fix a bug when using getenv(..., multi=True) with a non-existing environment variable.

2.1.3 - 2025-02-12

This is a minor bugfix release.

Fixed

  • Fix a bug related to input validation of steps with amended inputs.

2.1.2 - 2025-02-12

This is a minor bugfix release.

Fixed

  • Fix an RPC timeout bug.

2.1.1 - 2025-02-12

This is a minor bugfix release.

Fixed

  • Disable input checking when running a ValidateAmendJob. (It is expected that inputs may not be consistent yet at this stage.) This eliminates some false positive input errors.

2.1.0 - 2025-02-12

This release improves the overall robustness of StepUp. Most importantly, table constraints are introduced on the file table in .stepup/graph.db, eliminating potential bugs by design (or making them easier to fix). The constraints change the database schema, so graph.db files created with version 2.0 will be discarded. The workflow will be completely rebuilt after an upgrade to StepUp Core 2.1.

This release also refactors the implementation of file and step hashes, and worker processes. Finally, error messages and exception handling have been improved.

Added

  • The log level can be controlled with the STEPUP_LOG_LEVEL environment variable. Alternatively, set STEPUP_DEBUG=1, which will also activate additional debugging output. (This replaces the former STEPUP_STRICT environment variable.)
  • Improve handling of unexpected file changes. Before a step is executed or skipped, and after it has completed, changes to inputs (since they were declared static or built by previous steps), will cause the step to fail and the scheduler to drain. (This feature requires a database schema version increase.)

Changed

  • Because of other database schema changes in this release, also the FileState enumeration was relabeled in a more chronological order.
  • The cleanup command always runs in the most verbose mode (-v no longer supported). It now also supports the -d or --dry-run option to show which files would be cleaned.
  • The variable ${STEPUP_EXTERNAL_SOURCES} can now also contain relative paths, which are assumed to be relative to ${STEPUP_ROOT}.
  • The default timeout for RPC calls has been increased from 5 to 300 seconds. It can be controlled with the STEPUP_SYNC_RPC_TIMEOUT environment variable. Setting it to a negative value will disable the timeout and make RPC calls wait indefinitely for a response.

Fixed

  • Table constraints are introduced to ensure file states and hashes are consistent. This eliminates some difficult to reproduce bugs or makes them easier to fix. (This change requires a database schema version increase.)
  • Code documentation updates and internal cleanups.
  • Renaming and moving directories in watch phase is now handled correctly.
  • Fixed routine to wipe database in case of a schema version change.
  • Add safety check to prevent two StepUp instances from running in the same directory.
  • Add a warning when errors are reported in .stepup/director.log.
  • When running StepUp with the -w option and the scheduler is drained, queued steps are now made pending again, ensuring they are only executed when appropriate.

2.0.7 - 2025-02-06

This release fixes two recursive glob issues.

Fixed

  • Fixed issues with directories matching glob("...", _defer=True), which are later used as parent directories in various scenarios.
  • Fix bug in recursive glob to match data/inp.txt with the pattern data/**/inp.txt

2.0.6 - 2025-02-05

This release introduces the STEPUP_EXTERNAL_SOURCES environment variable for more fine-grained control over automatic dependency tracking.

Added

  • The STEPUP_EXTERNAL_SOURCES environment variable can be set to a colon-separated list of directories with source files outside STEPUP_ROOT. The script and call drivers use this to decide which imported Python modules to consider as inputs to a step.

Changed

2.0.5 - 2025-01-28

This is a minor release, just adding a utility function.

Changed

  • Use string_to_bool to interpret the environment variable STEPUP_STRICT. E.g., setting it to "0" will disable strict mode.

2.0.4 - 2025-01-28

This release fixes very minor issues. It is mainly for testing release automation.

Fixed

  • Use importlib.metadata instead of _version.py to get the version number.
  • Add --version option to stepup command.
  • Improve screen output consistency.

2.0.3 - 2025-01-27

This release fixes one pesky bug.

Fixed

  • It was previously not possible to reattach an orphaned step to a different creator when this step was not a top-level orphan. This limitation has been lifted, because it is a fully legitimate use case.

2.0.2 - 2025-01-25

This release fixes several bugs.

Added

  • Environment variable STEPUP_STRICT to enforce strict mode. This disables automatic fixes in the database that can only be caused by bugs.

Fixed

  • A bug is fixed in the logic to determine the type of job to run for a given step. Some steps were executed while not all required inputs were present.
  • A bug is fixed that caused optional steps not to be executed again, when their inputs had changed or their outputs were removed.
  • A bug is fixed that caused outputs of steps to be removed when they were changed from optional=False to optional=True.
  • Occasionally, .stepup/ was not created yet when the reporter tried writing to .stepup/success.log.
  • When multiple steps were changed and StepUp is restarted, steps created by a by another modified step were executed before the creating step. This is fixed.
  • Fix a few issues found by deepsource.io.

2.0.1 - 2025-01-22

(Version 2.0.0 was yanked due to a packaging issue.)

Added

  • New option -W or --watch-first to automatically rerun steps after a file has changed.
  • Press q a second time to kill running steps with SIGINT, similar to ctrl-c.
  • Press q a third time to kill running steps with SIGKILL, nuclear option.
  • stepup has a meaningful returncode:
    • 0 = all mandatory steps succeeded
    • 1 = internal error (Python exception)
    • 2 = at least one step failed
    • 3 = no steps failed, but some remained pending
  • Failed steps (if any) are also logged to .stepup/fail.log, which is more convenient to inspect than scrolling back in the terminal. Similarly, all warnings (if any) are written to .stepup/warning.log.
  • --perf option to analyze performance bottlenecks in the director process.
  • The “call” protocol is added as a light alternative to the “script” protocol. It can be used through the new call() function.
  • getinfo() function to retrieve the StepInfo object of the current step.
  • Cleanly exit the director process upon several types of exceptions (instead of hanging).
  • Gracefully handle SIGINT and SIGTERM, e.g. pressing ctrl-c in the terminal.

Changed

  • Breaking changes to stepup.core.api:

    • The getenv() function has been extended and now has three options (path, rebase and multi) to control how the environment variable gets processed.
    • The optional workdir argument of the script() function must always be specified as a keyword argument.
    • The block argument of the plan() function must be given as a keyword argument.
    • All optional arguments of copy() and mkdir() must be given as keyword arguments.
    • plan.py scripts must start with #!/usr/bin/env python3 instead of #!/usr/bin/env python.
    • The amend() function now raises an exception when the amended inputs are not available yet, instead of returning False.

  • Backward compatible changes to stepup.core.api:

    • The script() function has an extra step_info option to specify a file to which the step_info objects of the run part(s) is/are written. This comes with an extension of the script protocol: ./script.py plan must accept an optional argument --step-info=...
    • The script() function now accepts all arguments that can be passed on to the underlying step() call. There are only relevant for the plan stage of the script protocol.
    • The script driver() now detects local imports in the run() function of the script and amends them as inputs.
    • The plan() function now accepts all arguments that can be passed on to the underlying step() call.

  • Command-line and terminal interface changes:

    • By default, StepUp will exit after having executed all runnable steps. Use the option -w or --watch to keep stepup running and watching for file changes.
    • Keyboard interaction works with and without the (new) --watch option.
    • The cleanup script now also works when stepup is not running. It also features an improved verbosity option.

  • Terminology changes:

    • The “supplier ➜ consumer” graph is now called the dependency graph.
    • The “creator ➜ product” graph is now called the provenance graph.

  • Internal changes:

    • Complete refactoring of the internal workflow data structure, file format and the core algorithms. For example, if some files change, StepUp can better narrow down which steps are worth rerunning.
    • The workflow is now entirely stored in an SQLite database, in .stepup/graph.db, which has major benefits:
      • When an RPC call modifies the workflow and causes an exception, the workflow rolls back to its last known valid state (before the RPC call), thanks to SQLite’s ACID properties. This eliminates many potential bugs by construction.
      • Upon restart, StepUp can continue without noticeable delay where it last stopped, because its entire last-known state of the workflow is readily available. StepUp only needs to check for changed files and environment variables to decide if (additional) steps need to be made pending.
      • If something goes wrong unexpectedly in a complex production workflow, the graph.db file can be inspected with sqlitebrowser to debug the issue and potentially derive a small test case to be added to the unit tests. The use of SQLite adds a (small) computational overhead compared to storing the same information in native Python data structures. This release has not been extensively optimized for performance.
    • Improved tracking of file changes. Unexpected changes to input files of steps in the run phase will cause an exception.

Removed

  • StepUp no longer uses msgpack and uses pickling for serialization instead. The msgpack dependency has been removed. Related structure() and unstructure() methods have been removed.
  • The -f or --workflow argument of the director server has been removed.
  • The f (from scratch) and t (try replay) keys have been removed from the terminal user interface.

Fixed

  • When static file has been deleted (missing) and later restored, the restored file was not noticed when restarting StepUp. This is fixed.
  • Tests have been made compatible with Python 3.13.
  • Files with whitespace are handled correctly. (That being said, we don’t recommend using files with whitespace.)

1.3.1 - 2024-09-17

Fixed

  • Fix incorrect parsing of ?* and *? wildcards in the nglob module.

1.3.0 - 2024-08-27

Added

  • Add support for standard output and error redirection in the script driver. The dictionary returned by the info() or case_info() functions can include "stdout" and/or "stderr" items. The values of these two fields are paths to which the standard output and/or error of the run part of the script are redirected.
  • All API functions that define a step now return a StepInfo instance, which may contain useful information (e.g. output paths) to define follow-up steps. This is mainly useful for API extensions that define higher-level functions to create steps, e.g. as in StepUp RepRep.
  • The classes NGlobMulti has a new method single() and NGlobMatch has a new property single. These are only valid when there is a unique match, i.e. when the files() method or property has exactly one path.

Changed

  • Migrate load_module_file to stepup-reprep.
  • Replace watchdog by asyncinotify to avoid a long-standing issue in watchdog.
  • :warning: API-breaking :warning: When a step is defined with a working directory different from './', relative paths provided in other arguments to the step() function are interpreted relative to the given working directory, not the current working directory of the running process.
  • The directory .stepup is no longer created when running stepup without a plan.py.
  • The files in .stepup/logs have been renamed to *.log files under .stepup.

Fixed

  • Fix bug in the translation of relative paths before they are sent to the director process.
  • Add trailing slash to workdir argument of stepup.core.api.step() if it is missing.
  • Fix mistake in worker log filenames.
  • Fix bug in back translation of paths when substituted in a step command.
  • Improve compatibility of nglob with Python’s built-in glob.

1.2.8 - 2024-06-28

Fixed

  • Modify the script driver so that info() and case_info() may return empty dictionaries.

1.2.7 - 2024-06-24

Fixed

  • Add workaround for Python==3.11 bug with RPC over sockets. The RPC server (created with asyncio.start_unix_server) closes before all requests are handled. A stop event is now included for all RPC handlers to wait with stopping the server until every request is handled. This is a known issue fixed in Python 3.12.1.

1.2.6 - 2024-06-13

Fixed

  • Do not watch files when running StepUp non-interactively. This makes non-interactive mode a workaround for a nasty watchdog bug.

1.2.5 - 2024-06-13

Fixed

  • Effectively make watching recursive when a directory is added that is known in the workflow.
  • The function amend() now always returns True when the RPC client is a dummy. This fixes early exits from scripts that used amend() when they are called manually.
  • Prevent the Cannot watch non-existing directory error by ensuring that deferred glob matches exist before they are included as static files in the graph.
  • Check that local scripts have a shebang line before trying to execute them.
  • Improved continuous integration setup
  • Minor documentation improvements
  • Minor code cleanups

1.2.4 - 2024-05-27

Changed

  • Include “hidden” files when globbing.

Fixed

  • Do not refuse to replay unchanged step that declares its own static inputs.
  • Make recursive glob consistent with Python’s built-in glob in step.core.nglob.
  • Pool definitions are stored in workflow and replayed correctly when a step is skipped.

1.2.3 - 2024-05-19

Changed

  • Completed and revised docstrings in stepup.core.nglob, and added this module to the reference documentation.

Fixed

  • Improve hash computation of a symbolic links in stepup.core.hash.

1.2.2 - 2024-05-16

Changed

  • Documentation updates.

Fixed

  • Make cleanup command work in project subdirectories when STEPUP_ROOT is set.
  • Avoid useless wait when running a plan.py script outside of stepup.

1.2.1 - 2024-05-07

Fixed

  • Fixed packaging mistake that confused PyCharm and Pytest.

1.2.0 - 2024-05-02

Added

  • Export of graphs to Graphviz DOT files.
  • The cleanup script for manually cleaning up outputs.

Changed

  • Documentation updates.
  • Limit acyclic constraint to the supplier-consumer graph. This means a step can declare a static file and then amend it as input.
  • Refactoring of the file stepup.core.watcher module:
    • Replace dependency watchfiles by watchdog.
    • Rename functions in stepup.core.interact:
      • watch_add() -> watch_update()
      • watch_del() -> watch_delete()
    • Separate watcher and runner coroutines with reduced risk for race conditions related to watch_delete() and watch_update() to address TimeoutError.
    • Place custom asyncio utilities in stepup.core.asyncio.
    • The watcher also tracks changes to static files while steps are being executed.
    • Directories are watched as soon as they are created.
  • The function stepup.core.interact.graph takes a prefix argument instead of a full filename, e.g. graph instead of graph.txt.

Fixed

  • More graceful error message when the director process crashes early.
  • Fix compatibility with asciinema terminal recording.
  • Raise ConnectionResetError in SocketSyncRPCClient instead of blocking forever when the director process crashes.

1.0.0 - 2024-04-25

Initial release